get_collectri: CollecTRI gene regulatory network. Wrapper to access...

In saezlab/decoupleR: decoupleR: Ensemble of computational methods to infer biological activities from omics data

CollecTRI gene regulatory network. Wrapper to access CollecTRI gene regulatory network. CollecTRI is a comprehensive resource containing a curated collection of transcription factors (TFs) and their target genes. It is an expansion of DoRothEA. Each interaction is weighted by its mode of regulation (either positive or negative).

Description

CollecTRI gene regulatory network. Wrapper to access CollecTRI gene regulatory network. CollecTRI is a comprehensive resource containing a curated collection of transcription factors (TFs) and their target genes. It is an expansion of DoRothEA. Each interaction is weighted by its mode of regulation (either positive or negative).

Usage

get_collectri(organism = "human", split_complexes = FALSE, ...)

Arguments

organism	Which organism to use. Only human, mouse and rat are available.
split_complexes	Whether to split complexes into subunits. By default complexes are kept as they are.
...	Ignored.

Examples

collectri <- get_collectri(organism='human', split_complexes=FALSE)

saezlab/decoupleR documentation built on Oct. 21, 2024, 8:47 a.m.