get_progeny: Pathway RespOnsive GENes for activity inference (PROGENy).
In saezlab/decoupleR: decoupleR: Ensemble of computational methods to infer biological activities from omics data
get_progeny R Documentation
Pathway RespOnsive GENes for activity inference (PROGENy).
Description
Wrapper to access PROGENy model gene weights. Each pathway is defined with a
collection of target genes, each interaction has an associated p-value and
weight. The top significant interactions per pathway are returned.
Usage
get_progeny(organism = "human", top = 500)
Arguments
organism
Which organism to use. Only human and mouse are available.
top
Number of genes per pathway to return.
Examples
progeny <- get_progeny(organism='human', top=500)
saezlab/decoupleR documentation built on June 9, 2025, 1:55 p.m.
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| get_progeny | R Documentation |
Pathway RespOnsive GENes for activity inference (PROGENy).
Description
Wrapper to access PROGENy model gene weights. Each pathway is defined with a collection of target genes, each interaction has an associated p-value and weight. The top significant interactions per pathway are returned.
Usage
get_progeny(organism = "human", top = 500)
Arguments
organism |
Which organism to use. Only human and mouse are available. |
top |
Number of genes per pathway to return. |
Examples
progeny <- get_progeny(organism='human', top=500)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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