rename_net: Rename network

In saezlab/decoupleR: decoupleR: Ensemble of computational methods to infer biological activities from omics data

Rename network

Description

Renames a given network to these column names: .source, .target, .mor, If .mor is not provided, then the function sets them to default values.

Usage

rename_net(
  network,
  .source,
  .target,
  .mor = NULL,
  .likelihood = NULL,
  def_mor = 1
)

Arguments

network	Tibble or dataframe with edges and it's associated metadata.
.source	Column with source nodes.
.target	Column with target nodes.
.mor	Column with edge mode of regulation (i.e. mor).
.likelihood	Deprecated argument. Now it will always be set to 1.
def_mor	Default value for .mor when not provided.

Examples

inputs_dir <- system.file("testdata", "inputs", package = "decoupleR")
mat <- readRDS(file.path(inputs_dir, "mat.rds"))
net <- readRDS(file.path(inputs_dir, "net.rds"))
rename_net(net, source, target, mor)

saezlab/decoupleR documentation built on Oct. 21, 2024, 8:47 a.m.