Files in sahirbhatnagar/sail

Sparse Additive Interaction Learning

CODE_OF_CONDUCT.md NEWS.md R/cv.sail.R R/data.R R/kkt.R R/ksfilter.R R/lspath_strong.R R/lspath_weak.R R/methods.R R/plot.R R/sail.R R/simulations.R R/utils.R README.md cran-comments.md data-raw/OASIS_data.R data-raw/SIMULATED_data.R man/Q_theta.Rd man/createfolds.Rd man/cv.lspath.Rd man/cv.sail.Rd man/design_sail.Rd man/gendata.Rd man/gendataPaper.Rd man/oasis.Rd man/plot.cv.sail.Rd man/plot.sail.Rd man/plotInter.Rd man/plotMain.Rd man/predict.cv.sail.Rd man/predict.sail.Rd man/print.sail.Rd man/sail-internal.Rd man/sail.Rd man/sailsim.Rd man/standardize.Rd manuscript/bin/ADNI.R manuscript/bin/PRS_bootstrap.R manuscript/bin/PRS_eval_functions.R manuscript/bin/PRS_method_functions.R manuscript/bin/PRS_model_functions.R manuscript/bin/PRS_plot_functions.R manuscript/bin/PRS_plots.R manuscript/bin/intro.R manuscript/bin/setup.R manuscript/bin/simulation.R manuscript/bin/support_bootstrap.R manuscript/bin/support_plots.R manuscript/comments/06012018_143425.pdf manuscript/source/biometrics/authors.md manuscript/source/biometrics/biomguide300719.pdf manuscript/source/biometrics/biomsample.pdf manuscript/source/biometrics/biomsample2.pdf manuscript/source/biometrics/biomsample_bib.pdf manuscript/source/biometrics/biomsample_referee.pdf manuscript/source/biometrics/biomtemplate.pdf manuscript/source/biometrics/sail_biometrics-1-35.pdf manuscript/source/biometrics/sail_biometrics-36-63.pdf manuscript/source/biometrics/sail_biomtemplate.pdf manuscript/source/biometrics/sail_supplemental.pdf manuscript/source/biostatistics/sail_biostatistics-1-35.pdf manuscript/source/biostatistics/sail_biostatistics-36-63.pdf manuscript/source/csda/authors.md manuscript/source/csda/biomguide300719.pdf manuscript/source/csda/biomsample.pdf manuscript/source/csda/biomsample2.pdf manuscript/source/csda/biomsample_bib.pdf manuscript/source/csda/biomsample_referee.pdf manuscript/source/csda/biomtemplate.pdf manuscript/source/csda/sail_biometrics-1-35.pdf manuscript/source/csda/sail_biometrics-36-63.pdf manuscript/source/csda/sail_biomtemplate.pdf manuscript/source/csda/sail_cover_letter_csda.pdf manuscript/source/csda/sail_csda.pdf manuscript/source/csda/sail_csda_supp.pdf manuscript/source/csda/sail_supplemental.pdf manuscript/source/figure/PRS-intervention-interaction-1.pdf manuscript/source/figure/PRS-intervention-interaction-others-1.pdf manuscript/source/figure/PRS-model-selection-1.pdf manuscript/source/figure/dzclass-interaction-1.pdf manuscript/source/figure/error-crosses-adni-1.pdf manuscript/source/figure/plot-fpr-sim-1.pdf manuscript/source/figure/plot-inter-adni-1.pdf manuscript/source/figure/plot-mse-nactive-sim-1.pdf manuscript/source/figure/plot-mse-sim-1.pdf manuscript/source/figure/plot-nactive-sim-1.pdf manuscript/source/figure/plot-tpr-sim-1.pdf manuscript/source/figure/sail-cv-1.pdf manuscript/source/figure/sail-expand-false-1.pdf manuscript/source/figure/sail-inter-eff-1.pdf manuscript/source/figure/sail-main-eff-1.pdf manuscript/source/figure/sail-pf-path-1.pdf manuscript/source/figure/sail-plot-cv-design-1.pdf manuscript/source/figure/sail-solution-path-1.pdf manuscript/source/figure/sail-solution-path-linear-1.pdf manuscript/source/figure/toy-effects-1.pdf manuscript/source/figure/toy-solution-path-1.pdf manuscript/source/sail_biometrics.pdf manuscript/source/sail_biostatistics.pdf manuscript/source/sail_manuscript_supp-36-57.pdf manuscript/source/sail_manuscript_v2.pdf manuscript/source/sail_manuscript_v2_biostatistics.pdf my_sims/README.md my_sims/eval_functions.R my_sims/figures/sail_inter25_X3_paramIndex1_200sims.pdf my_sims/figures/sail_inter25_X4_paramIndex1_200sims.pdf my_sims/figures/sail_inter50_X3_paramIndex1_200sims.pdf my_sims/figures/sail_inter50_X4_paramIndex1_200sims.pdf my_sims/figures/sail_inter75_X3_paramIndex1_200sims.pdf my_sims/figures/sail_inter75_X4_paramIndex1_200sims.pdf my_sims/figures/sail_intertruth_X3_paramIndex1_200sims.pdf my_sims/figures/sail_intertruth_X4_paramIndex1_200sims.pdf my_sims/figures/sail_main_eff_paramIndex1_200sims.pdf my_sims/figures/upset_selection_sail_paramIndex1-2-2.pdf my_sims/figures/upset_selection_sail_paramIndex1.pdf my_sims/main.R my_sims/mcgill_simulations.R my_sims/mcgill_simulations_analysis.R my_sims/mcgill_simulations_gendata.R my_sims/mcgill_simulations_gendata_cvfit.R my_sims/mcgill_simulations_gendata_glint_lassoBT.R my_sims/mcgill_simulations_lasso.R my_sims/method_functions.R my_sims/method_functions_rda.R my_sims/model_functions.R my_sims/nonlinear_motivation_plot.R my_sims/plot_functions_rda_ADNI.R my_sims/testing_sail.R my_sims/writeup.Rmd rda/PRS/05_IQdataset_MAIN_simulations_with outliers removed.R rda/PRS/05_model_functions-not-used.R rda/functions-old.R rda/rda_ADNI.R rda/rda_ADNI_figures.R rda/rda_ADNI_v2.R rda/rda_NIHPD.R rda/rda_NIHPD_data_cleaning.R rda/rda_OASIS.R rda/rda_ashley.R rda/rda_deldup.R rda/rda_econ.R rda/rda_mlbench.R rda/rda_scott.R rda/rds_Credit.R rda/scott/interaction_distance_density.pdf rda/scott/maineff_distance_to_aiport.pdf rda/scott/maineff_traffic_counts.pdf rda/scrap_funshim.R tests/testthat.R tests/testthat/test-cv.sail.R tests/testthat/test-gendata.R tests/testthat/test-plots.R tests/testthat/test-sail.R vignettes/introduction-to-sail.Rmd vignettes/user-defined-design.Rmd