Read_Metrics_CellBender: Read Overall Statistics from CellBender

In samuel-marsh/scCustomize: Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing

Read Overall Statistics from CellBender

Description

Get data.frame with all metrics from the CellBender remove-background analysis.

Usage

Read_Metrics_CellBender(base_path, lib_list = NULL, lib_names = NULL)

Arguments

base_path	path to the parent directory which contains all of the sub-directories of interest or path to single metrics csv file.
lib_list	a list of sample names (matching directory names) to import. If NULL will read in all samples in parent directory.
lib_names	a set of sample names to use for each sample. If NULL will set names to the directory name of each sample.

Value

A data frame with sample metrics from CellBender.

Examples

## Not run: 
CB_metrics <- Read_Metrics_CellBender(base_path = "/path/to/directories")

## End(Not run)

samuel-marsh/scCustomize documentation built on Dec. 20, 2024, 7:41 a.m.