In sanger-pathogens/deago: DEAGO: RNASeq differential expression analysis and GO term enrichment reporter

knitr::opts_chunk$set(tidy=FALSE, cache=FALSE, dev="png", message=FALSE, error=FALSE, warning=TRUE)

Introduction

Preparing input data

For a comprehensive explanation

Mapping

@Love2014 @Alexa2016

Please make sure to cite the packages which are used for analysis by deago:

DESeq2

Love, M.I., Huber, W., Anders, S., Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2, Genome Biology 2014, 15:550. 10.1186/s13059-014-0550-8

topGO

Alexa, A. and Rahnenfuhrer, J., topGO: Enrichment Analysis for Gene Ontology, 2016, r BiocStyle::pkg_ver('topGO')

Acknowledgments

A special thanks must go to the authors of DESeq2, whose documentation and development style has been an invaluable inspiration.

Session information

sessionInfo()

References

sanger-pathogens/deago documentation built on May 28, 2019, 8:42 a.m.