callPeakFisher: callPeakFisher

In scottzijiezhang/m6Amonster: Analyze m6A seq data

Usage

callPeakFisher(readsOut, min_counts = 15, peak_cutoff_fdr = 0.05,
  peak_cutoff_oddRatio = 1, threads = 1)

Arguments

readsOut	The list object of countReads function.
min_counts	The minimal number of reads present in a bin to be called a peak.
peak_cutoff_fdr	The cutoff of fdr of fisher's exact test to call peak.
peak_cutoff_oddRatio	The minimal oddRatio of fisher's exact test to call peak.
threads	The number of threads to use. Default uses 1 threads.

scottzijiezhang/m6Amonster documentation built on Jan. 8, 2021, 1:37 p.m.