API for scottzijiezhang/m6Amonster
Analyze m6A seq data

Global functions
Bino_test Source code
Fisher_information Source code
Fisher_information_one_beta Source code
GuitarPlotNew Man page Source code
JointPeakCount Man page Source code
LogLikelihood_beta_psi_mu2 Source code
LogLikelihood_for_individual_sample Source code
LogLikelihood_multiple_beta_psi_mu2 Source code
PoissionGamma Source code
PoissionGamma_FISHER Source code
PoissionGamma_multiple_beta Source code
QNBtest Man page Source code
QTL_PoissonGamma Man page Source code
adjustExprLevel Man page Source code
callPeakBinomial Source code
callPeakFisher Man page Source code
cnetplot.enrichResult Man page Source code
cnetplot_internal Source code
combineListOfDataFrame Source code
combineListOfGRanges Source code
combineListOfSplicing Source code
combinedGuitarPlot Source code
coordinate_descent_for_individual_sample Source code
correct_individual_sample Source code
countGuitarDensity Source code
countReadFromBam Source code
countReads Man page Source code
diffIP Man page Source code
extractComponent Source code
filterPeak Man page Source code
fisher_exact_test Source code
fishersMethod Source code
genoDosage Source code
get.col.scale Source code
get2sides Source code
getAveCoverage Source code
getCov Source code
getGeneBins Source code
getGeneModelAnno Source code
getNeighborhood Source code
getPeakBins Source code
getTPM Man page Source code
gradient_and_LogLikelihood_for_individual_sample Source code
gradient_beta_psi_mu2 Source code
gradient_descent_alt Source code
gradient_descent_beta_psi_mu2 Source code
gradient_descent_for_individual_sample Source code
gradient_descent_multiple_beta_psi_mu2 Source code
gradient_multiple_beta_psi_mu2 Source code
gtfToGeneModel Man page Source code
list2graph Source code
log_factorial Source code
log_factorial_calculated Source code
makeFigure_fill Source code
makeFigure_nofill Source code
makeGuitarCoordsForSingleIndex Source code
makeGuitarCoordsFromGRangesList Source code
makeGuitarCoordsFromTxDb Source code
multiplot Source code
netplot Source code
new_initialization_of_parameters Source code
new_initialization_of_parameters2 Source code
noZero Source code
normalizeLibrary Man page Source code
normalizePeak Man page Source code
peakDistribution Man page Source code
peakExons Source code
peakToGRangesList Source code
plotExpression Man page Source code
plotGene Man page Source code
plotGeneCov Man page Source code
plotGeneCoverage Man page Source code
plotGeneMonster Man page Source code
plotGenePair Man page Source code
plotMetaGene Man page Source code
plotMetaGeneMulti Man page Source code
plotPCA.DESeq2 Source code
plotPCAfromMatrix Man page Source code
plotTPM Man page Source code
qqplot.pvalue Man page Source code
randomPeaks Source code
reportConsistentPeak Man page Source code
reportJointPeak Man page Source code
reportPoissonGammaMerge Man page Source code
scaleNodeColor Source code
select_stepsize_for_a_parameter Source code
select_stepsize_for_beta Source code
select_stepsize_for_mu2 Source code
select_stepsize_for_mu2_with_multiple_beta Source code
select_stepsize_for_multiple_beta Source code
select_stepsize_for_psi Source code
select_stepsize_for_psi_with_multiple_beta Source code
setting.graph.attributes Source code
spliceSingleTrans Source code
scottzijiezhang/m6Amonster documentation built on Dec. 20, 2018, 8:12 p.m.