diffIP: diffIP

In scottzijiezhang/m6Amonster: Analyze m6A seq data

Usage

diffIP(x, Covariates = NULL, plotPvalue = TRUE, p.adjBy = "fdr",
  exclude = NULL, mode, maxPsi = 100)

Arguments

x	The RNADMethyl data list
Covariates	Matrix of covariates to include in the PoissonGamma test. Default is NULL.
p.adjBy	The method used to adjust for the p value. Default is 'fdr'. Can be "bonferroni","BY","fdr".
exclude	Names of samples to exclude (as outlier) in the test. Default is NULL
mode	Run test on "bin" mode or "peak" mode.
maxPsi	The cutoff value for random effect parameter Psi estimation

Value

x The RNADMethyl data list with estimators

scottzijiezhang/m6Amonster documentation built on Jan. 8, 2021, 1:37 p.m.