1 2 | plotGeneCov(readsOut, geneName, libraryType = "opposite", center = "mean",
GTF, ZoomIn = NULL, adjustExprLevel = TRUE)
|
readsOut |
The data list from countReads and other analysis. |
geneName |
The gene symbol to be ploted. |
libraryType |
Specify whether the library is the same or opposite strand of the original RNA molecule. Default is "opposite". |
center |
Specify the method to calculate average coverage of each group. Could be mean or median. |
GTF |
The GRanges object containing gtf annotation. Can obtain by rtracklayer::import("file.gtf", format= "gtf"). |
ZoomIn |
c(start,end) The coordinate to zoom in at the gene to be ploted. |
adjustExprLevel |
logical parameter. Specify whether normalize the two group so that they have similar expression level. |
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