plotGenePair: plotGenePair

In scottzijiezhang/m6Amonster: Analyze m6A seq data

Description

plot tow groups of samples in the same figure

Usage

plotGenePair(Ctl_IP_BAM, Ctl_INPUT_BAM, Treat_IP_BAM, Treat_INPUT_BAM,
  Ctl_size.IP, Ctl_size.INPUT, Treat_size.IP, Treat_size.INPUT, geneName,
  geneModel, libraryType = "ooposite", center = mean, GTF, ZoomIn = NULL)

Arguments

Ctl_IP_BAM	The bam files for Control IP samples
Ctl_INPUT_BAM	The bam files for Control INPUT samples
Treat_IP_BAM	The bam files for treated IP samples
Treat_INPUT_BAM	The bam files for treated INPUT samples
Ctl_size.IP	The size factor for IP libraries
Ctl_size.INPUT	The size factor for INPUT libraries
Treat_size.IP	The size factor for IP libraries
Treat_size.INPUT	The size factor for INPUT libraries
geneName	The name (as defined in gtf file) of the gene you want to plot
geneModel	The gene model generated by gtfToGeneModel() function
libraryType	"opposite" for mRNA stranded library, "same" for samll RNA library

scottzijiezhang/m6Amonster documentation built on Jan. 8, 2021, 1:37 p.m.