bafLikelihood: Calculate the likelihood of the observed B allele frequencies...
In scristia/CNPBayes: Bayesian mixture models for copy number polymorphisms
Description
Usage
Arguments
Value
View source: R/genotype_cnps.R
Description
Calculate the likelihood of the observed B allele frequencies for a given copy number model
Usage
1
bafLikelihood(cn.model, snpdata)
Arguments
cn.model
a copy number model
snpdata
a SummarizedExperiment with assay element 'GT' containing an integer coding (1, 2, and 3) for the generic genotypes AA, AB, and BB, respectively.
Value
a list. The first element is the log likeihood and the second element is the copy number model that maximized the likelihood.
scristia/CNPBayes documentation built on Aug. 9, 2020, 7:31 p.m.
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Description Usage Arguments Value
View source: R/genotype_cnps.R
Description
Calculate the likelihood of the observed B allele frequencies for a given copy number model
Usage
1 | bafLikelihood(cn.model, snpdata)
|
Arguments
cn.model |
a copy number model |
snpdata |
a |
Value
a list. The first element is the log likeihood and the second element is the copy number model that maximized the likelihood.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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