genotype_model: Map mixture component labels to integer copy numbers
In scristia/CNPBayes: Bayesian mixture models for copy number polymorphisms
Description
Usage
Arguments
Value
Description
Mapping is performed using the B allele frquencies for SNPs spanned by the candidate deletion/duplication polymorphism. Multiple components can be mapped to a single copy number state, but one-to-many mapping is not permitted
Usage
1
genotype_model(model, snpdat)
Arguments
model
a 'MultiBatch' instance
snpdat
a 'SummarizedExperiment' containing B allele frequences
Value
a 'MultiBatch' instance. The mapping is now accessible through 'mapping'.
scristia/CNPBayes documentation built on Aug. 9, 2020, 7:31 p.m.
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Description Usage Arguments Value
Description
Mapping is performed using the B allele frquencies for SNPs spanned by the candidate deletion/duplication polymorphism. Multiple components can be mapped to a single copy number state, but one-to-many mapping is not permitted
Usage
1 | genotype_model(model, snpdat)
|
Arguments
model |
a 'MultiBatch' instance |
snpdat |
a 'SummarizedExperiment' containing B allele frequences |
Value
a 'MultiBatch' instance. The mapping is now accessible through 'mapping'.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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