mixture_plot: List of figures useful for evaluating model fit.

In scristia/CNPBayes: Bayesian mixture models for copy number polymorphisms

Description

Creates list of figures used by CNPBayes to evaluate model fit and mapping of mixture component assignments to copy number states

Usage

mixture_plot(model, snpdat, xlimit = c(-4, 1), bins = 100)

Arguments

model	a MultiBatch instance for a CNV region
snpdat	a SummarizedExperiment containing B allele frequencies at SNPs in the CNV region
xlimit	x-axis limits for log ratio density and posterior predictive distribution
bins	number of bins used by geom_histogram to display the primary data

Details

The resulting list of figures can be plotted as a composite using the function mixture_layout.

Value

a list of figures

See Also

mixture_layout

scristia/CNPBayes documentation built on Aug. 9, 2020, 7:31 p.m.