Files in shaliulab/idocr
Analyze traces created in the Individual Drosophila Optogenetics Conditioner (IDOC)

.Rbuildignore

.covrignore

.gitignore

.travis.yml

DESCRIPTION

LICENSE

NAMESPACE

NEWS.md R/analysis.R R/configuration.R R/controller.R R/cross.R R/data.R R/documentation.R R/export.R R/global_load.R R/idocr.R R/integration.R R/linking.R R/load.R R/main.R R/manual.R R/masks.R R/paired.R R/paired_themes.R R/paired_utils.R R/paths.R R/plot.R R/preference.R R/rectangles.R R/roxygen.R R/tests.R R/toy_data.R R/tracker.R R/utils.R README.md

codecov.yml

data-raw/DATASET.R

data/toy_dataset.rda

idocr.Rproj

inst/dev.R inst/extdata/2021-04-11_17-59-00/2021-04-11_17-59-00_7eb8e224bdb944a68825986bc70de6b1.pdf

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inst/extdata/toy/2021-01-01_01-01-01_00000000000000000000000000000000_ROI_CENTER.csv

inst/extdata/toy/2021-01-01_01-01-01_00000000000000000000000000000000_ROI_MAP.csv

inst/extdata/toy/2021-01-01_01-01-01_00000000000000000000000000000000_SUMMARY.csv

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inst/extdata/toy/FIRST_TWO_MINS/2021-01-01_01-01-01_00000000000000000000000000000000_FIRST_TWO_MINS.pdf

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inst/filter.R inst/main.R inst/main_idocr2.R inst/make_roi_center.R

inst/roi_centers/IDOC_001/ROI_CENTER.csv

inst/roi_centers/IDOC_002/ROI_CENTER.csv

inst/run.R man/add_empty_roi.Rd man/add_significance_marks.Rd man/analyse_dataset.Rd man/annotate_cross.Rd man/annotate_cross_all.Rd man/annotate_facet.Rd man/base_plot.Rd man/build_filename.Rd man/center_dataset.Rd man/check_api_version.Rd man/combine_inputs.Rd man/compute_preference_index.Rd man/construct_animal_id.Rd man/cross_detector.Rd man/define_rectangle.Rd man/define_rectangle_all.Rd man/document_plot.Rd man/document_script.Rd man/export_dataset.Rd man/export_pi_summary.Rd man/export_summary.Rd man/export_summary_new.Rd man/find_exits.Rd man/find_exits_all.Rd man/find_file.Rd man/find_rois.Rd man/format_text.Rd man/fwrite_.Rd man/generate_toy_dataset.Rd man/get_event_data.Rd man/get_extra_columns.Rd man/get_metadata.Rd man/get_roi_center.Rd man/global_mask.Rd man/idocr.Rd man/idocr_time.Rd man/interpolate_controller.Rd man/link_idoc_metadata.Rd man/load_controller.Rd man/load_dataset.Rd man/load_metadata.Rd man/load_rois.Rd man/load_systematic_rois.Rd man/load_varmap.Rd man/make_outputs.Rd man/make_summary.Rd man/mark_analysis_mask.Rd man/mark_crosses.Rd man/mark_decision_zone.Rd man/mark_space.Rd man/mark_stimuli.Rd man/mark_time.Rd man/melt_idoc_data.Rd man/pad_t0.Rd man/paired_plot.Rd man/parse_side.Rd man/pipeline.Rd man/plot_dataset.Rd man/preference_index.Rd man/preprocess_controller.Rd man/preprocess_dataset.Rd man/preprocess_tracker.Rd man/process_folder.Rd man/read_pi.Rd man/read_roi.Rd man/rebound.Rd man/remove_duplicates.Rd man/remove_empty_roi.Rd man/reshape_controller.Rd man/save_plot.Rd man/scale_rectangle.Rd man/seconds_mask.Rd man/sort_facet_levels.Rd man/toy_controller.Rd man/toy_dataset.Rd man/toy_roi.Rd man/toy_roi_all.Rd man/update_scores_with_manual_annotation.Rd man/validate_events.Rd man/validate_inputs.Rd man/validate_number_of_fields.Rd man/validate_varmap_file.Rd man/walk.Rd man/write_dataset.Rd

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tests/figs/ab-plot-decision-zone-50.svg

tests/figs/ab-plot-document-plot.svg

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tests/figs/ab-plot-mark-analysis-mask.svg

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tests/figs/ab-plot-mark-crosses.svg

tests/figs/ab-plot-mark-time-custom-freq.svg

tests/figs/ab-plot-mark-time-upward.svg

tests/figs/ab-plot-mark-time.svg

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tests/figs/dd-idocr-masks-analysis-multimask2.svg

tests/figs/dd-idocr-masks-plot-mask.svg

tests/figs/deps.txt

tests/vdiffr_onexit.sh

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vignettes/analyse-IDOC.Rmd

shaliulab/idocr documentation built on June 1, 2025, 4:59 p.m.

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shaliulab/idocr
Analyze traces created in the Individual Drosophila Optogenetics Conditioner (IDOC)

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Analyze traces created in the Individual Drosophila Optogenetics Conditioner (IDOC)

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shaliulab/idocr Analyze traces created in the Individual Drosophila Optogenetics Conditioner (IDOC)

Files in shaliulab/idocr Analyze traces created in the Individual Drosophila Optogenetics Conditioner (IDOC)

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shaliulab/idocr
Analyze traces created in the Individual Drosophila Optogenetics Conditioner (IDOC)

Files in shaliulab/idocr
Analyze traces created in the Individual Drosophila Optogenetics Conditioner (IDOC)