BSeq-sc: Deconvolution of Bulk Sequencing Experiments using Single Cell Data

BSeq-sc is a bioinformatics analysis pipeline that leverages single-cell sequencing data to estimate cell type proportion and cell type-specific gene expression differences from RNA-seq data from bulk tissue samples.

Bseq-SC pipeline

How to cite BSeq-sc

When using this work in any way, please cite the following publication:

A single-cell transcriptomic map of the human and mouse pancreas reveals inter- and intra-cell population structure M. Baron, A. Veres, S.L. Wolock, A. L. Faust, R. Gaujoux, A. Vetere, J. Hyoje Ryu, B. K. Wagner, S. Shen-Orr, A. M. Klein, D. A. Melton, I. Yanai Cell Systems. 2016 Oct 26 10.1016/j.cels.2016.08.011


# install devtools if necessary

# install the bseqsc package

# load

More information

shenorrLab/bseqsc documentation built on May 29, 2019, 9:23 p.m.