bseqsc_csdiff: Testing for Cell Type-Specific Gene Expression Differences

Description Usage Arguments References

View source: R/analysis.R

Description

Uses csSAM (Shen-Orr et al. (2010)) to estimate cell type-specific expression and test for group differences in each cell type.

Usage

1

Arguments

formula

csSAM model to fit specified as a formula

data

cell type proportion matrix (samples x cell types).

...

other arguments passed to csSAM::csSAMfit.

References

Shen-Orr SS, Tibshirani R, Khatri P, Bodian DL, Staedtler F, Perry NM, Hastie T, Sarwal MM, Davis MM and Butte AJ (2010). <e2><80><9c>Cell type-specific gene expression differences in complex tissues.<e2><80><9d> Nature methods, 7(4), pp. 287-9. ISSN 1548-7105, doi: 10.1038/nmeth.1439 (URL: http://doi.org/10.1038/nmeth.1439).


shenorrLab/bseqsc documentation built on May 26, 2017, 8:06 a.m.