bseqsc by setting up
CIBERSORT source code.
path to the CIBERSORT source R code.
logical that indicates if an error should be thrown if configuration failed.
CIBERSORT to estimate cell type proportions, based on reference expression profiles.
Due to licensing requirements, source code for this algorithm needs to be
downloaded separately from its website http://cibersort.stanford.edu.
It is released under the Stanford Non-Commercial License.
In order to use it with
bseqsc you will need to:
Got to http://cibersort.stanford.edu
Register and log in
Download the latest R source code from the Downloadsection.
bseqsc by pointing it to the downloaded file. This is
done using the function
bseqsc_config, which will copy the given R
source file into the
R-data/bseqsc sub-directory in the user's home
directory for subsequent usage:
the path where the file was copied, or
bseqsc is not correctly
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