bseqsc_proportions: Estimating Cell Type Proportions From Single Cell Data

Description Usage Arguments Value

View source: R/analysis.R

Description

Estimating Cell Type Proportions From Single Cell Data

Usage

1
bseqsc_proportions(x, reference = NULL, log = NULL, ..., verbose = TRUE)

Arguments

x

Expression data from heterogenous samples

reference

Bisis matrix of reference cell type expression profiles. If NULL then a built-in reference for pancreatic islet cell sub-population is used (data PancreasIslet).

log

logical that indicates if the data x is in in log-scale. If NULL, then log scale is inferred by xbioc::is_logscale.

...

other arguments passed to CIBERSORT.

verbose

logical that toggles log messages.

Value

a list with elements:


shenorrLab/bseqsc documentation built on May 26, 2017, 8:06 a.m.