bseqsc_proportions: Estimating Cell Type Proportions From Single Cell Data

In shenorrLab/bseqsc: Deconvolution of Bulk Sequencing Experiments using Single Cell Data

Description

Estimating Cell Type Proportions From Single Cell Data

Usage

bseqsc_proportions(x, reference = NULL, log = NULL, ..., verbose = TRUE)

Arguments

x	Expression data from heterogenous samples
reference	Bisis matrix of reference cell type expression profiles. If NULL then a built-in reference for pancreatic islet cell sub-population is used (data PancreasIslet).
log	logical that indicates if the data x is in in log-scale. If NULL, then log scale is inferred by xbioc::is_logscale.
...	other arguments passed to CIBERSORT.
verbose	logical that toggles log messages.

Value

a list with elements:

• coef: matrix of estimated proportions (cell type x samples)

• stats: statistics computed by CIBERSORT

shenorrLab/bseqsc documentation built on May 29, 2019, 9:23 p.m.