plotBasis: Generates Heatmap of Basis Matrix

In shenorrLab/bseqsc: Deconvolution of Bulk Sequencing Experiments using Single Cell Data

Description

Draws a heatmap of reference cell type expression profiles, highlighting marker genes.

Usage

plotBasis(x, markers = NULL, scale = "r1", ...)

Arguments

x	matrix or cell type reference expression profiles (genes x cell types)
markers	named list of marker genes. The llist should be named using cell type names corresponding to column names in x. Genes are named using the identifiers corresponding to row names in x. Genes (rows) of x that are not in any element of markers are discarded. Columns of x that match no element in markers are discarded.
scale	scaling strategy. See NMF::aheatmap.
...	other arguments passed to NMF::aheatmap.

shenorrLab/bseqsc documentation built on May 29, 2019, 9:23 p.m.