Man pages for shenorrLab/bseqsc
Deconvolution of Bulk Sequencing Experiments using Single Cell Data
| bseqsc_basis | Building a Basis Matrix of Reference Gene Expression Profiles |
| bseqscColorTheme | Color Theme for BSEQsc Vignettes |
| bseqsc_config | Setup BSeq-SC External Dependencies |
| bseqsc_csdiff | Testing for Cell Type-Specific Gene Expression Differences |
| bseqsc-package | bseqsc: Deconvolution of Bulk Sequencing Experiments using... |
| bseqsc_proportions | Estimating Cell Type Proportions From Single Cell Data |
| cpm_cell_type | Scale Single Cell Data According to Average Cell Type... |
| fitEdgeR | Fitting EdgeR Model |
| getMITRIB | MITRIB Lists known ribosomal or mitochondrial genes. |
| MITRIB | Ribosomal and Mitochondrial Genes |
| PancreasIslet | Reference Basis Matrix of Pancreatic Islet Cell Types |
| pancreasMarkers | Marker Genes for Pancreas Islet Cells |
| plotBasis | Generates Heatmap of Basis Matrix |
| plotCellTotals | Plots Total Count Per Cell Type |
| plotEffectSize | Plotting Cell Type-Specific Expression Effect Size |
| pvalueScatter | P-Value Scatter Plot |
| rscData | Generates Random Single Cell Data |
