Man pages for shouguog/cellcallEXT
inference of intercellular networks from single-cell transcriptomics
| CellInter-class | The CellInter Class The CellInter object is the center of... |
| ConnectProfile | create a Cellwave objects |
| counts2normalized_10X | transform count to CPM |
| counts2normalized_smartseq2 | transform count to RPKM or TPM within Hsapiens and Mmusculus |
| CreateNichConObject | create a Cellwave objects |
| CreateObject_fromSeurat | Create Nichobject from Seurat object |
| getCorrelatedGene | get relation among specific TF |
| getDistanceKEGG | abstract path from kegg pathway file |
| getForBubble | melt enrich dataframe for bubble graph |
| getGSEA | calculate enrich for each celltype with all regulons |
| getGSEAplot | plot enrichment graph |
| getHyperPathway | enrich communication relation on the pathway |
| LR2TF | get score of Triple relation corresponding specific... |
| LRT.Dimplot | get score of Triple relation corresponding specific... |
| mylog2foldChange.diy | calculate foldchange for each celltype |
| mylog2foldChange.diy.casecontrol | calculate foldchange between case and control for each... |
| plotBubble | plot bubble graph |
| ridgeplot.DIY | plot ridge graph |
| sankey_graph | plot circle graph with communication profile |
| trans2tripleScore | get score of Triple relation corresponding specific... |
| TransCommuProfile | get CommuProfile from a Cellwave objects |
| ViewInterCircos | plot circle graph with communication profile |
| viewPheatmap | plot pheatmap graph with communication profile |
