counts2normalized_smartseq2: transform count to RPKM or TPM within Hsapiens and Mmusculus

In shouguog/cellcallEXT: inference of intercellular networks from single-cell transcriptomics

Description

transform count to RPKM or TPM within Hsapiens and Mmusculus

Usage

counts2normalized_smartseq2(data, Org, toType, scale.factor = 10^6)

Arguments

data	a dataframe of count with row of gene and column of sample
Org	choose the species source of gene, eg "Homo sapiens", "Mus musculus"
toType	whether RPKM or TPM of result you wanted, eg "RPKM", "TPM"
scale.factor	set the scale factor, default "10^6"

Value

the RPKM or TPM of data

shouguog/cellcallEXT documentation built on Jan. 2, 2022, 8:13 p.m.