ridgeplot.DIY: plot ridge graph
In shouguog/cellcallEXT: inference of intercellular networks from single-cell transcriptomics
Description
plot ridge graph
Usage
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ridgeplot.DIY(
x,
showCategory = targetTFindex,
fill = "p.adjust",
core_enrichment = TRUE,
orderBy = "NES",
decreasing = FALSE
)
Arguments
x
gseaResult object
showCategory
number of categories for plotting
fill
one of "pvalue", "p.adjust", "qvalue"
core_enrichment
whether only using core_enriched genes
orderBy
The order of the Y-axis, default is NES, other colnames is ok, eg: "ID", "Description", "setSize", "enrichmentScore", "p.adjust".
decreasing
logical. Should the orderBy order be increasing or decreasing?
shouguog/cellcallEXT documentation built on Jan. 2, 2022, 8:13 p.m.
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Description
plot ridge graph
Usage
1 2 3 4 5 6 7 8 | ridgeplot.DIY(
x,
showCategory = targetTFindex,
fill = "p.adjust",
core_enrichment = TRUE,
orderBy = "NES",
decreasing = FALSE
)
|
Arguments
x |
gseaResult object |
showCategory |
number of categories for plotting |
fill |
one of "pvalue", "p.adjust", "qvalue" |
core_enrichment |
whether only using core_enriched genes |
orderBy |
The order of the Y-axis, default is NES, other colnames is ok, eg: "ID", "Description", "setSize", "enrichmentScore", "p.adjust". |
decreasing |
logical. Should the orderBy order be increasing or decreasing? |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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