getHyperPathway: enrich communication relation on the pathway

In shouguog/cellcallEXT: inference of intercellular networks from single-cell transcriptomics

Description

enrich communication relation on the pathway

Usage

getHyperPathway(
  data,
  object,
  cella_cellb,
  IS_core = TRUE,
  Org = "Homo sapiens"
)

Arguments

data	a dataframe of communication score with row LR and column cellA-cellB
cella_cellb	explore the LR between sender cellA and receiver cellB, eg: "A-B"
IS_core	logical variable ,whether use reference LR data or include extended datasets
Org	choose the species source of gene, only "Homo sapiens" in this version.

Value

the dataframe with column: Pvalue, Jaccard, NES and pathway

shouguog/cellcallEXT documentation built on Jan. 2, 2022, 8:13 p.m.