getGSEA: calculate enrich for each celltype with all regulons
In shouguog/cellcallEXT: inference of intercellular networks from single-cell transcriptomics
Description
Usage
Arguments
Value
View source: R/codeAllCaseControl_v1.5.R
Description
calculate enrich for each celltype with all regulons
Usage
1
getGSEA(term_gene_list, FC_OF_CELL, minGSSize = 5, maxGSSize = 500)
Arguments
term_gene_list
all regulons of genes denotes geneSet
FC_OF_CELL
the cell type which you want to calculate the foldchange
minGSSize
set the min size of each geneSet
maxGSSize
set the max size of each geneSet
Value
the enrich result of each celltype with all regulons
shouguog/cellcallEXT documentation built on Jan. 2, 2022, 8:13 p.m.
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Description Usage Arguments Value
View source: R/codeAllCaseControl_v1.5.R
Description
calculate enrich for each celltype with all regulons
Usage
1 | getGSEA(term_gene_list, FC_OF_CELL, minGSSize = 5, maxGSSize = 500)
|
Arguments
term_gene_list |
all regulons of genes denotes geneSet |
FC_OF_CELL |
the cell type which you want to calculate the foldchange |
minGSSize |
set the min size of each geneSet |
maxGSSize |
set the max size of each geneSet |
Value
the enrich result of each celltype with all regulons
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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