GenomeOfNl_raw: Example data for the Indel vignette

In slw287r/yapsa: Yet Another Package for Signature Analysis

Description

GenomeOfNl_raw: A data frame contains the gemiline varinats of the dutch population. carrying point mutation calls. It represents a subset of the data stored in ftp://ftp.sanger.ac.uk/pub/cancer/AlexandrovEtAl/somatic_mutation_data/Lymphoma B-cell/Lymphoma B-cell_clean_somatic_mutations_for_signature_analysis.txt. In the file available under that link somatic point mutation calls from several samples are listed in a vcf-like format. One column encodes the sample the variant was found in.

Usage

data(GenomeOfNl_raw)

Value

A data frame in a vcf-like format

References

release version 5 http://www.nlgenome.nl/?page_id=9

Examples

data(GenomeOfNl_raw)
head(GenomeOfNl_raw)
dim(GenomeOfNl_raw)

slw287r/yapsa documentation built on June 7, 2020, 12:46 a.m.