aggregate_exposures_by_category: Aggregate exposures by category

In slw287r/yapsa: Yet Another Package for Signature Analysis

Description

If a valid category (i.e. it matches to a category specified in in_sig_ind_df) is supplied, then the exposures are aggregated over this category.

Usage

aggregate_exposures_by_category(in_exposures_df, in_sig_ind_df, in_category)

Arguments

in_exposures_df	Input data frame of exposures.
in_sig_ind_df	Input data frame of meta information on the signatures. Has to match the signatures in in_exposures_df
in_category	Category to be aggregated over

Value

A list with entries:

• exposures: The exposures H, a numeric data frame with l rows and m columns, l being the number of aggregated signatures and m being the number of samples

• norm_exposures: The normalized exposures H, a numeric data frame with l rows and m columns, l being the number of aggregated signatures and m being the number of samples

• out_sig_ind_df: Data frame of the type signature_indices_df, i.e. indicating name, function and meta-information of the aggregated signatures..

See Also

LCD_complex_cutoff

Examples

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slw287r/yapsa documentation built on June 7, 2020, 12:46 a.m.