Description Usage Arguments Value See Also Examples
Compare all strata from different orthogonal stratification axes, i.e. othogonal SMCs by cosine similarity of signature exposures. First calls
make_strata_df
, then
plot_strata
and finally
make_comparison_matrix
1 2 3 4 5 6 7 | compare_SMCs(
in_stratification_lists_list,
in_signatures_ind_df,
output_path,
in_nrect = 5,
in_attribute = ""
)
|
in_stratification_lists_list |
List of lists with entries from different (orthogonal) stratification axes or SMCs |
in_signatures_ind_df |
A data frame containing meta information about the signatures |
output_path |
Path to directory where the results, especially the figure
produced by |
in_nrect |
Number of clusters in the clustering procedure provided by
|
in_attribute |
Additional string for the file name where the figure
produced by |
The comparison matrix of cosine similarities.
1 |
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