Description Usage Arguments Value See Also Examples
Compare all strata from different orthogonal stratification axes, i.e. othogonal SMCs by cosine similarity of signature exposures. First calls
make_strata_df, then 
plot_strata
and finally 
make_comparison_matrix 
1 2 3 4 5 6 7  | compare_SMCs(
  in_stratification_lists_list,
  in_signatures_ind_df,
  output_path,
  in_nrect = 5,
  in_attribute = ""
)
 | 
in_stratification_lists_list | 
 List of lists with entries from different (orthogonal) stratification axes or SMCs  | 
in_signatures_ind_df | 
 A data frame containing meta information about the signatures  | 
output_path | 
 Path to directory where the results, especially the figure
produced by   | 
in_nrect | 
 Number of clusters in the clustering procedure provided by
  | 
in_attribute | 
 Additional string for the file name where the figure
produced by   | 
The comparison matrix of cosine similarities.
1  | 
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