classify_indels: INDEL function V1 - not compartible with AlexandrovSignatures
In slw287r/yapsa: Yet Another Package for Signature Analysis
Description
Usage
Arguments
Value
Examples
Description
INDEL function V1 - not compartible with AlexandrovSignatures
Usage
1
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classify_indels(
in_df,
in_ALT.field = "ALT",
in_REF.field = "REF",
in_breaks = c(-Inf, -10, -3, 0, 2, 9, Inf),
in_labels = c("del3", "del2", "del1", "in1", "in2", "in3")
)
Arguments
in_df
Input data frame containing the variances in a vcf-like format
in_ALT.field
Column number for alternitve field
in_REF.field
Coloumn number for reference field
in_breaks
Handed over to function cut
in_labels
Handed over to function cut
Value
classVector, a factor vector of indel sizes
Examples
1
slw287r/yapsa documentation built on June 7, 2020, 12:46 a.m.
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Description Usage Arguments Value Examples
Description
INDEL function V1 - not compartible with AlexandrovSignatures
Usage
1 2 3 4 5 6 7 | classify_indels(
in_df,
in_ALT.field = "ALT",
in_REF.field = "REF",
in_breaks = c(-Inf, -10, -3, 0, 2, 9, Inf),
in_labels = c("del3", "del2", "del1", "in1", "in2", "in3")
)
|
Arguments
in_df |
Input data frame containing the variances in a vcf-like format |
in_ALT.field |
Column number for alternitve field |
in_REF.field |
Coloumn number for reference field |
in_breaks |
Handed over to function cut |
in_labels |
Handed over to function cut |
Value
classVector, a factor vector of indel sizes
Examples
1 |
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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