enrichSigs: Compare to background distribution

Description Usage Arguments Value Examples

View source: R/confidence.R

Description

Compare exposures from an analysis of mutational signatures in a cohort of interest to exposures computed in a background (e.g. the set of WES and WGS samples from Alexandrov 2013).

Usage

1
enrichSigs(in_cohort_exposures_df, in_background_exposures_df, in_sig_df)

Arguments

in_cohort_exposures_df

Numerical data frame of the exposures of the cohort of interest.

in_background_exposures_df

Numerical data frame of the exposures of the background.

in_sig_df

Numerical data frame encoding the mutational signatures.

Value

A data frame with counts and p-values from Fisher tests.

Examples

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slw287r/yapsa documentation built on June 7, 2020, 12:46 a.m.