enrichSigs: Compare to background distribution
In slw287r/yapsa: Yet Another Package for Signature Analysis
Description
Usage
Arguments
Value
Examples
Description
Compare exposures from an analysis of mutational signatures in a cohort of
interest to exposures computed in a background (e.g. the set of WES and WGS
samples from Alexandrov 2013).
Usage
1
enrichSigs(in_cohort_exposures_df, in_background_exposures_df, in_sig_df)
Arguments
in_cohort_exposures_df
Numerical data frame of the exposures of the
cohort of interest.
in_background_exposures_df
Numerical data frame of the exposures of
the background.
in_sig_df
Numerical data frame encoding the mutational signatures.
Value
A data frame with counts and p-values from Fisher tests.
Examples
1
slw287r/yapsa documentation built on June 7, 2020, 12:46 a.m.
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Description Usage Arguments Value Examples
Description
Compare exposures from an analysis of mutational signatures in a cohort of interest to exposures computed in a background (e.g. the set of WES and WGS samples from Alexandrov 2013).
Usage
1 | enrichSigs(in_cohort_exposures_df, in_background_exposures_df, in_sig_df)
|
Arguments
in_cohort_exposures_df |
Numerical data frame of the exposures of the cohort of interest. |
in_background_exposures_df |
Numerical data frame of the exposures of the background. |
in_sig_df |
Numerical data frame encoding the mutational signatures. |
Value
A data frame with counts and p-values from Fisher tests.
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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