get_extreme_PIDs: Return those PIDs which have an extreme pattern for signature...
In slw287r/yapsa: Yet Another Package for Signature Analysis
Description
Usage
Arguments
Value
Examples
View source: R/complex_functions.R
Description
For all signatures found in a project, this function returns the sample
identifiers (PIDs) with extremely high or extremely low exposures of the
respective signatures.
Usage
1
get_extreme_PIDs(in_exposures_df, in_quantile = 0.03)
Arguments
in_exposures_df
Data frame with the signature exposures
in_quantile
Quantile for the amount of extreme PIDs to be selected.
Value
A data frame with 4 rows per signature (high PIDs, high exposures,
low PIDs, low exposures); the number of columns depends on the quantile
chosen.
Examples
1
2
data(lymphoma_cohort_LCD_results)
get_extreme_PIDs(lymphoma_Nature2013_COSMIC_cutoff_exposures_df,0.05)
slw287r/yapsa documentation built on June 7, 2020, 12:46 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
View source: R/complex_functions.R
Description
For all signatures found in a project, this function returns the sample identifiers (PIDs) with extremely high or extremely low exposures of the respective signatures.
Usage
1 | get_extreme_PIDs(in_exposures_df, in_quantile = 0.03)
|
Arguments
in_exposures_df |
Data frame with the signature exposures |
in_quantile |
Quantile for the amount of extreme PIDs to be selected. |
Value
A data frame with 4 rows per signature (high PIDs, high exposures, low PIDs, low exposures); the number of columns depends on the quantile chosen.
Examples
1 2 | data(lymphoma_cohort_LCD_results)
get_extreme_PIDs(lymphoma_Nature2013_COSMIC_cutoff_exposures_df,0.05)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.