xcmsFragments: Constructor for xcmsFragments objects which holds Tandem MS...
In sneumann/xcms-presvnbridge: LC/MS and GC/MS Data Analysis
Description
Usage
Arguments
Details
Value
Author(s)
See Also
View source: R/xcmsFragments.R
Description
EXPERIMANTAL FEATURE
xcmsFragments is an object similar to xcmsSet, which holds peaks
picked (or collected) from one or several xcmsRaw objects.
There are still discussions going on about the exact API for MS$^n$
data, so this is likely to change in the future. The code is not yet
pipeline-ified.
Usage
1
xcmsFragments(xs, ...)
Arguments
xs
A xcmsSet-class object which contains
picked ms1-peaks from one or several experiments
...
further arguments to the collect method
Details
After running collect(xFragments,xSet) The peaktable of the
xcmsFragments includes the ms1Peaks from all experinemts stored in a
xcmsSet-object. Further it contains the relevant MSn-peaks from the
xcmsRaw-objects, which were created temporarily with the paths in
xcmsSet.
Value
An xcmsFragments object.
Author(s)
Joachim Kutzera, Steffen Neumann, sneumann@ipb-halle.de
See Also
sneumann/xcms-presvnbridge documentation built on May 30, 2019, 6:02 a.m.
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Description Usage Arguments Details Value Author(s) See Also
View source: R/xcmsFragments.R
Description
EXPERIMANTAL FEATURE
xcmsFragments is an object similar to xcmsSet, which holds peaks picked (or collected) from one or several xcmsRaw objects.
There are still discussions going on about the exact API for MS$^n$ data, so this is likely to change in the future. The code is not yet pipeline-ified.
Usage
1 | xcmsFragments(xs, ...)
|
Arguments
xs |
A |
... |
further arguments to the |
Details
After running collect(xFragments,xSet) The peaktable of the xcmsFragments includes the ms1Peaks from all experinemts stored in a xcmsSet-object. Further it contains the relevant MSn-peaks from the xcmsRaw-objects, which were created temporarily with the paths in xcmsSet.
Value
An xcmsFragments object.
Author(s)
Joachim Kutzera, Steffen Neumann, sneumann@ipb-halle.de
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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