Man pages for soedinglab/merlot
MERLoT
| branch_differential_expression | differential expression in specific branch |
| CalculateElasticTree | Calculate Elastic Tree |
| CalculateElasticTreeConstrained | Calculate elastic tree with iterative constraints |
| CalculatePseudotimes | Calculate Pseudotime |
| CalculateScaffoldTree | Calculate Scaffold tree |
| dataset_n_observations | From destiny: Helper function for diffusion map calculations. |
| DuplicateTreeNodes | Duplicate Elastic Tree Nodes Introduces intermediate nodes in... |
| GenesSpaceEmbedding | Gene Space Embedding |
| GetGeneCorrelationNetwork | Get Gene Correlation Network |
| get_node_graph | Calculates an adjacency matrix for the support nodes of an... |
| GetTrajectory | Get Cells from Trajectory |
| inflate_elastic_tree | Takes an elastic tree calculated on reduced coordinates and... |
| LoadExprMatrix | LoadExprMatrix |
| plot_elastic_tree | Plot Elastic Tree |
| plot_flattened_tree | Plots a flattened 2 dimensional version of the Elastic Tree... |
| plot_flattened_tree_gene_expression | Plots the gene expression level of a gene on a flattened 2... |
| plot_gene_on_map | Plots Gene Expression on Cells Coordinates |
| plot_heatmaps_embedding | Plot Expression Matrix Embedding |
| plot_pseudotime_expression_gene | Plot pseudotime expression gene |
| plot_pseudotimes | Plot cells pseudotime |
| plot_scaffold_tree | Plot Scaffold Tree |
| ReadDataset | ReadDataset |
| seurat_normalize | seurat normalize |
| seurat_variable_genes | Seurat variable genes, according to the Seurat's package |
| subpopulations_differential_expression | Subpopulations differential expression |
| wrap.DiffusionMap | From destiny: Wrapper to create a diffusion map of cells. |
