CalculatePseudotimes: Calculate Pseudotime
In soedinglab/merlot: MERLoT
Description
Calculates pseudotime for the cells either on the low dimensional space or the full gene expression space. Users can define which is the endpoint or cell that will be used as the initial time (t0) respect to which the pseudotimes to all cells will be calculated.
Usage
1
CalculatePseudotimes(InputTree, plot = F, T0 = 1, C0 = NULL)
Arguments
InputTree
elastic tree according to which the pseudotime will be calculated. It can be a low dimensional elastic tree as the one calculated by CalculateElasticTree() or a high dimensional elastic tree like the one calculated by GeneSpaceEmbedding()
plot
whether or not this function will produce plots
T0
which endpoint will be used at time zero
C0
which cell will be used as time zero
soedinglab/merlot documentation built on June 28, 2020, 9:36 a.m.
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Description
Calculates pseudotime for the cells either on the low dimensional space or the full gene expression space. Users can define which is the endpoint or cell that will be used as the initial time (t0) respect to which the pseudotimes to all cells will be calculated.
Usage
1 | CalculatePseudotimes(InputTree, plot = F, T0 = 1, C0 = NULL)
|
Arguments
InputTree |
elastic tree according to which the pseudotime will be calculated. It can be a low dimensional elastic tree as the one calculated by CalculateElasticTree() or a high dimensional elastic tree like the one calculated by GeneSpaceEmbedding() |
plot |
whether or not this function will produce plots |
T0 |
which endpoint will be used at time zero |
C0 |
which cell will be used as time zero |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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