plot_pseudotime_expression_gene: Plot pseudotime expression gene

Description Usage Arguments

Description

Plot Gene Expression Profile as a function of pseudotime

Usage

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plot_pseudotime_expression_gene(GeneName, EmbeddedTree, Pseudotimes,
  selectedcolors = grDevices::rainbow(length(Pseudotimes$Branches)),
  branch_tags = c(), addlegend = F, range_y = "tree")

Arguments

GeneName

an element from the Datasets$GeneNames object.

EmbeddedTree

High dimensional principal elastic tree.

Pseudotimes

object calculated by CalculatePseudotimes()

selectedcolors

The colors to use for the branches

branch_tags

The tags to use for the branches

addlegend

Whether or not to add a legend

range_y

Must be either "cells" or "tree"


soedinglab/merlot documentation built on June 28, 2020, 9:36 a.m.