Description Usage Arguments Value
View source: R/StatisticalTests.R
Given an elastic tree it calculates genes that are differentially expressed in a particular branch in the tree
1 2 | branch_differential_expression(Branch, EmbeddedTree, mode = c("tree",
"cells"))
|
Branch |
It is a vector containing the indexes of cells to be part of the first Subpopulation |
EmbeddedTree |
Embedded Elastic Tree as calculated by GenesSpaceEmbedding() |
mode |
whether the cell expression profiles or the tree nodes expression profiles will be taken into account for the test. "cells" uses the expression values from the cells. "tree" |
genes_significances list object containing the p-values ($pvals) and e-values ($evals) vectors for the kruskall wallis test ordered from the highest significance to the lowest one. A vector containing the gene names ($GeneName) ordered as the significances vector is also provided. Another vector ($indexes) containing the original index order for genes in the columns from the expression matrix is also provided.
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