Man pages for soedinglab/merlot
MERLoT

branch_differential_expressiondifferential expression in specific branch
CalculateElasticTreeCalculate Elastic Tree
CalculateElasticTreeConstrainedCalculate elastic tree with iterative constraints
CalculatePseudotimesCalculate Pseudotime
CalculateScaffoldTreeCalculate Scaffold tree
dataset_n_observationsFrom destiny: Helper function for diffusion map calculations.
DuplicateTreeNodesDuplicate Elastic Tree Nodes Introduces intermediate nodes in...
GenesSpaceEmbeddingGene Space Embedding
GetGeneCorrelationNetworkGet Gene Correlation Network
get_node_graphCalculates an adjacency matrix for the support nodes of an...
GetTrajectoryGet Cells from Trajectory
inflate_elastic_treeTakes an elastic tree calculated on reduced coordinates and...
LoadExprMatrixLoadExprMatrix
plot_elastic_treePlot Elastic Tree
plot_flattened_treePlots a flattened 2 dimensional version of the Elastic Tree...
plot_flattened_tree_gene_expressionPlots the gene expression level of a gene on a flattened 2...
plot_gene_on_mapPlots Gene Expression on Cells Coordinates
plot_heatmaps_embeddingPlot Expression Matrix Embedding
plot_pseudotime_expression_genePlot pseudotime expression gene
plot_pseudotimesPlot cells pseudotime
plot_scaffold_treePlot Scaffold Tree
ReadDatasetReadDataset
seurat_normalizeseurat normalize
seurat_variable_genesSeurat variable genes, according to the Seurat's package
subpopulations_differential_expressionSubpopulations differential expression
wrap.DiffusionMapFrom destiny: Wrapper to create a diffusion map of cells.
soedinglab/merlot documentation built on June 28, 2020, 9:36 a.m.