Man pages for soedinglab/merlot
MERLoT

branch_differential_expressiondifferential expression in specific branch
CalculateElasticTreeCalculate Elastic Tree
CalculateElasticTreeConstrainedCalculate elastic tree with iterative constraints
CalculatePseudotimesCalculate Pseudotime
CalculateScaffoldTreeCalculate Scaffold tree
DuplicateTreeNodesDuplicate Elastic Tree Nodes Introduces intermediate nodes in...
GenesSpaceEmbeddingGene Space Embedding
GetGeneCorrelationNetworkGet Gene Correlation Network
GetTrajectoryGet Cells from Trajectory
LoadExprMatrixLoadExprMatrix
plot_elastic_treePlot Elastic Tree
plot_flattened_treePlots a flattened 2 dimensional version of the Elastic Tree...
plot_flattened_tree_gene_expressionPlots the gene expression level of a gene on a flattened 2...
plot_gene_on_mapPlots Gene Expression on Cells Coordinates
plot_heatmaps_embeddingPlot Expression Matrix Embedding
plot_pseudotime_expression_genePlot pseudotime expression gene
plot_pseudotimesPlot cells pseudotime
plot_scaffold_treePlot Scaffold Tree
ReadDatasetReadDataset
seurat_normalizeseurat normalize
seurat_variable_genesSeurat variable genes, according to the Seurat's package
subpopulations_differential_expressionSubpopulations differential expression
soedinglab/merlot documentation built on Aug. 11, 2018, 12:03 p.m.