calc.fst.nei: Calculate Fst using Nei's formulation (1-(Hw/2Hb))

In spflanagan/gwscaR: Genome-wide Selection Components Analysis in R

Description

Calculate Fst using Nei's formulation (1-(Hw/2Hb))

Usage

calc.fst.nei(al1, al2)

Arguments

al1	A table of allele frequencies for pop 1
al2	A table of allele frequencies for pop 2

Value

data.frame containing the columns: Hs1 = expected heterozygosity in population 1 (vcf1) Hs2 = expected heterozygosity in population 2 (vcf2) Hs = weighted average expected heterozygosity within populations Ht = expected heterozygosity among populations Fst= Fst NumAlleles=The number of alleles (2 for biallelic loci) Num1=number of individuals genotyped & included in Fst calculations in population 1 (vcf1) Num2=number of individuals genotyped & included in Fst calculations in population 2 (vcf2) @export

spflanagan/gwscaR documentation built on Nov. 14, 2019, 9:16 p.m.