gwsca: Conduct selection components analysis
In spflanagan/gwscaR: Genome-wide Selection Components Analysis in R
Description
Usage
Arguments
Value
Description
Conduct selection components analysis
Usage
1
2
gwsca(vcf, locus.info, group1, group2, prop.ind.thresh = 0.5,
maf.cutoff = 0.05)
Arguments
vcf
A data.frame with genotype data in vcf format
locus.info
A list of column names with the locus info (e.g. c(#CHROM,POS))
group1
A list of column names with individuals from the first group
group2
A list of column names with individuals from the second group
prop.ind.thresh
A proportion of indidivudals requried in each population (default is 0.5)
maf.cutoff
A minimum allele frequency cutoff (default is 0.05)
Value
A dataframe with the Fst values and Chi-squared values
spflanagan/gwscaR documentation built on Nov. 14, 2019, 9:16 p.m.
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Description Usage Arguments Value
Description
Conduct selection components analysis
Usage
1 2 | gwsca(vcf, locus.info, group1, group2, prop.ind.thresh = 0.5,
maf.cutoff = 0.05)
|
Arguments
vcf |
A data.frame with genotype data in vcf format |
locus.info |
A list of column names with the locus info (e.g. c(#CHROM,POS)) |
group1 |
A list of column names with individuals from the first group |
group2 |
A list of column names with individuals from the second group |
prop.ind.thresh |
A proportion of indidivudals requried in each population (default is 0.5) |
maf.cutoff |
A minimum allele frequency cutoff (default is 0.05) |
Value
A dataframe with the Fst values and Chi-squared values
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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