vcf2coanAF: Convert a vcf df to a coancestry input file
In spflanagan/gwscaR: Genome-wide Selection Components Analysis in R
Description
Usage
Arguments
Value
Examples
View source: R/gwscaR_utility.R
Description
Convert a vcf df to a coancestry input file
Usage
1
vcf2coanAF(vcf, out.name = "coancestry_afs.txt")
Arguments
vcf
A data.frame in vcf format
out.name
A name for a an output file (default is coancestry_afs.txt)
Value
co.afs A dataframe with all of the allele frequencies
Examples
1
2
3
vcf.file<-system.file("extdata", "example.vcf.txt",package = "gwscaR")
vcf<-parse.vcf(vcf.file)
co.afs<-vcf2coanAF(vcf,"coancestry_afs.txt")
spflanagan/gwscaR documentation built on Nov. 14, 2019, 9:16 p.m.
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Description Usage Arguments Value Examples
View source: R/gwscaR_utility.R
Description
Convert a vcf df to a coancestry input file
Usage
1 | vcf2coanAF(vcf, out.name = "coancestry_afs.txt")
|
Arguments
vcf |
A data.frame in vcf format |
out.name |
A name for a an output file (default is coancestry_afs.txt) |
Value
co.afs A dataframe with all of the allele frequencies
Examples
1 2 3 | vcf.file<-system.file("extdata", "example.vcf.txt",package = "gwscaR")
vcf<-parse.vcf(vcf.file)
co.afs<-vcf2coanAF(vcf,"coancestry_afs.txt")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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