vcf2gpop: Convert a vcf df to a genepop file
In spflanagan/gwscaR: Genome-wide Selection Components Analysis in R

Description Usage Arguments Value Examples

Convert a vcf df to a genepop file

1	vcf2gpop(vcf, pop.list = NULL, pop.map = NULL, gpop.name)

`vcf`	A data.frame in vcf format
`pop.list`	A list of population names (the individuals must have names containing the population names)
`pop.map`	A data frame with col 1 = ID names and col 2 = pop names
`gpop.name`	A name for the output genepop file

gpop A dataframe in genepop format

vcf.file<-system.file("extdata", "example.vcf.txt",package = "gwscaR")
vcf<-parse.vcf(vcf.file)
gpop<-vcf2gpop(vcf,
    pop.list=c("FEM","PRM","OFF"),
    gpop.name="out.genepop")