sliding.window: Calculate a sliding window

In spflanagan/gwscaR: Genome-wide Selection Components Analysis in R

Description

Calculate a sliding window

Usage

sliding.window(vcf, chr, stat = "pi", width = 250, pop.list = NULL,
  nsteps = 50)

Arguments

vcf	A vcf file
chr	The chromosome you want to calculate the sliding window in
stat	the population genetics statistic you want to use. choices are "pi" or "rho"
width	The width for the sliding window. Default is 250
pop.list	An optional parameter allowing you to specificy the populations you want to include.
nsteps	The number of steps in the sliding window

Value

A vector with the averaged statistic

spflanagan/gwscaR documentation built on Nov. 14, 2019, 9:16 p.m.