calc.het: calculate observed heterozygosity
In spflanagan/gwscaR: Genome-wide Selection Components Analysis in R
Description
Usage
Arguments
Value
Note
Examples
View source: R/gwscaR_popgen.R
Description
calculate observed heterozygosity
Usage
1
Arguments
vcf.row
A row of a vcf file, used in conjunction with apply
pop.list
A list of population strings to search for to subset vcf (pop names must be in individual ID names)
Value
Observed heterozygosity
Note
proportion of diploid genotypes in the sample that are heterozygotes (Hohenlohe et al 2010)
Examples
1
2
3
vcf.file<-system.file("extdata", "example.vcf.txt",package = "gwscaR")
vcf<-parse.vcf(vcf.file)
all.het<-apply(vcf,1,calc.het)
spflanagan/gwscaR documentation built on Nov. 14, 2019, 9:16 p.m.
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Description Usage Arguments Value Note Examples
View source: R/gwscaR_popgen.R
Description
calculate observed heterozygosity
Usage
1 |
Arguments
vcf.row |
A row of a vcf file, used in conjunction with apply |
pop.list |
A list of population strings to search for to subset vcf (pop names must be in individual ID names) |
Value
Observed heterozygosity
Note
proportion of diploid genotypes in the sample that are heterozygotes (Hohenlohe et al 2010)
Examples
1 2 3 | vcf.file<-system.file("extdata", "example.vcf.txt",package = "gwscaR")
vcf<-parse.vcf(vcf.file)
all.het<-apply(vcf,1,calc.het)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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