calc.rho: Calculate rho (private alleles)
In spflanagan/gwscaR: Genome-wide Selection Components Analysis in R
Description
Usage
Arguments
Note
View source: R/gwscaR_popgen.R
Description
Calculate rho (private alleles)
Usage
1
calc.rho(vcf.row, pop.list)
Arguments
vcf.row
A row of a data frame containing vcf-formatted data
pop.list
A list with the population names (these should be contained within the sample names)
Note
rho=1 if allele in pop j is only found in that pop and at least one ind was genotyped at that site in each pop; rho = 0 otherwise
spflanagan/gwscaR documentation built on Nov. 14, 2019, 9:16 p.m.
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Description Usage Arguments Note
View source: R/gwscaR_popgen.R
Description
Calculate rho (private alleles)
Usage
1 | calc.rho(vcf.row, pop.list)
|
Arguments
vcf.row |
A row of a data frame containing vcf-formatted data |
pop.list |
A list with the population names (these should be contained within the sample names) |
Note
rho=1 if allele in pop j is only found in that pop and at least one ind was genotyped at that site in each pop; rho = 0 otherwise
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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