duprateExpFit: Duplication rate ~ total read count fit model
In ssayols/dupRadar: Assessment of duplication rates in RNA-Seq datasets
View source: R/duprateExpFit.R
duprateExpFit R Documentation
Duplication rate ~ total read count fit model
Description
duprateExpDensPlot Duplication rate ~ total read count fit model
Usage
duprateExpFit(DupMat)
Arguments
DupMat
The duplication matrix calculated by analyzeDuprates
Details
Fit a Generalized Linear Model using a logit function between thegene
duplication rate and the total read count.
Value
The GLM and the coefficients of the fitted logit function
Examples
# dm is a duplication matrix calculated by analyzeDuprates:
# R> dm <- analyzeDuprates(bamDuprm,gtf,stranded,paired,threads)
attach(dupRadar_examples)
# duprate plot
duprateExpFit(DupMat=dm)
ssayols/dupRadar documentation built on Oct. 10, 2023, 10:18 p.m.
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View source: R/duprateExpFit.R
| duprateExpFit | R Documentation |
Duplication rate ~ total read count fit model
Description
duprateExpDensPlot Duplication rate ~ total read count fit model
Usage
duprateExpFit(DupMat)
Arguments
DupMat |
The duplication matrix calculated by |
Details
Fit a Generalized Linear Model using a logit function between thegene duplication rate and the total read count.
Value
The GLM and the coefficients of the fitted logit function
Examples
# dm is a duplication matrix calculated by analyzeDuprates:
# R> dm <- analyzeDuprates(bamDuprm,gtf,stranded,paired,threads)
attach(dupRadar_examples)
# duprate plot
duprateExpFit(DupMat=dm)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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