readcountExpBoxplot: Barplot of percentage of reads falling into expression bins

In ssayols/dupRadar: Assessment of duplication rates in RNA-Seq datasets

Barplot of percentage of reads falling into expression bins

Description

readcountExpBoxplot Barplot of percentage of reads falling into expression bins

Usage

readcountExpBoxplot(DupMat, stepSize = 0.05, ...)

Arguments

DupMat	The duplication matrix calculated by analyzeDuprates
stepSize	The number of bars to be shown
...	Other parameters sent to barplot()

Details

This function makes a barplot of percentage of reads falling into expression bins

Value

nothing Other parameters sent to barplot()

Examples

# dm is a duplication matrix calculated by analyzeDuprates:
# R> dm <- analyzeDuprates(bamDuprm,gtf,stranded,paired,threads)
attach(dupRadar_examples)


# barplot of percentage of reads falling into expression bins
readcountExpBoxplot(DupMat=dm)

ssayols/dupRadar documentation built on Oct. 30, 2024, 4:42 a.m.