getDupMatStats: Report duplication stats on regions
In ssayols/dupRadar: Assessment of duplication rates in RNA-Seq datasets
View source: R/getDupMatStats.R
getDupMatStats R Documentation
Report duplication stats on regions
Description
getDupMatStats Report duplication stats based on the data calculated
in the duplication matrix
Usage
getDupMatStats(DupMat)
Arguments
DupMat
The duplication matrix calculated by analyzeDuprates
Value
A data.frame containing the stats about the number of genes covered
(1+ tags) and the number of genes containing duplicates (1+)
Examples
# dm is a duplication matrix calculated by analyzeDuprates:
# R> dm <- analyzeDuprates(bamDuprm,gtf,stranded,paired,threads)
attach(dupRadar_examples)
# call the plot and identify genes
getDupMatStats(DupMat=dm)
ssayols/dupRadar documentation built on Oct. 10, 2023, 10:18 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/getDupMatStats.R
| getDupMatStats | R Documentation |
Report duplication stats on regions
Description
getDupMatStats Report duplication stats based on the data calculated
in the duplication matrix
Usage
getDupMatStats(DupMat)
Arguments
DupMat |
The duplication matrix calculated by |
Value
A data.frame containing the stats about the number of genes covered (1+ tags) and the number of genes containing duplicates (1+)
Examples
# dm is a duplication matrix calculated by analyzeDuprates:
# R> dm <- analyzeDuprates(bamDuprm,gtf,stranded,paired,threads)
attach(dupRadar_examples)
# call the plot and identify genes
getDupMatStats(DupMat=dm)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.