Cell-to-cell variation in chromatin accessibility

add_gcbias | Calculate GC content of every DNA sequence |

bedgraphs_to_accessibility_matrix | Bedgraph files to accessibility matrix |

bedgraphs_to_summarized_experiment | Bedgraph files to SummarizedExperiment |

calculate_variation | Calculate cell-to-cell variation in chromatin accessibility |

centroid_distance | Distance from Centroid in Principal Coordinate Space using... |

cosine_distance | Angular cosine distance |

get_background_peaks | Background peak selection |

matrix_to_summarized_experiment | Creates a Summarized Experiment from an accessibility matrix |

raw_variation | Calculate unnormalized cell-to-cell variation in chromatin... |

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