centroid_distance: Distance from Centroid in Principal Coordinate Space using...

Description Usage Arguments Examples

Description

When using default parameters, calculates cell-to-cell variation (between columns) in accessibility using angular cosine distance inputted into principal coordinate analysis. The centroid of the cells in principal coordinate space is found, then each cell's distance from the centroid constitutes the variability.

Usage

1
centroid_distance(data, distance = "cosine", method = "centroid")

Arguments

data

An accessibility matrix, with columns as cells and rows as DNA sequences.

Examples

1

stanleycai123/PRISM documentation built on May 5, 2019, 12:33 p.m.